Meta Gems 
The best gem for your meta socket depends on if you have Fleet Footed or not. For pure DPS based gems, the choices are;
Relentless Earthsiege Diamond
Chaotic Skyflare Diamond
I prefer the Relentless Earthsiege Diamond – if you take away the +0.25% crit that the agility on it gives you, you’re comparing +21 agility and +0.3% dodge to the Skyflare’s +0.21% crit.
If you don’t have the Fleet Footed talent, you may prefer to take this gem instead;
The following gems may also be worth a look, though I haven’t seen any high ranked rogues bothering with them;
Potent Unstable Diamond
Persistent Earthsiege Diamond
Red Gems 
Currently, the best overall stat for a red gem is Attack Power as your poisons/envenom damage receives more bonus damage through raw AP than agility.
Bright Cardinal Ruby or Bright Scarlet Ruby
An exception to the unwritten ‘rule’ that AP is best is the Fractured Cardinal Ruby. With a combat spec using Mace Specialization, gemming entirely with +ArP is supposed to absolutely flatten plate wearers, esoecially when combined with Grim Toll procs. I’d try it out, but I’d have to resocket and spend my last Arena Points of the season on an OH mace I might never use again….
Yellow/Orange Gems 
Yellow gems give crit, hit and resilience. You need 164 hit to be capped against all classes except Night Elves (to guarantee a hit on a Night Elf you need 7% hit rather than 5%), if you are bellow this then it’s worth gemming for +hit. Resilience is a tricky subject – 700 is a nice amount to aim for, but unlike other stats it doesn’t particularly lose its value at certain levels. I wouldn’t take +resilience instead of +attack power, but personally I value it more than +crit for yellow sockets.
+Hit Gems
Rigid King’s Amber or Rigid Autumn’s Glow
Pristine Ametrine or Pristine Monarch Topaz
+Resilience Gems
Kharmaa’s Grace (Bought with 20 Stonekeeper’s Shards from Winter Grasp)
Empowered Ametrine or Empowered Monarch Topaz
Mystic King’s Amber or Mystic Autumn’s Glow
Blue/Purple Gems 
To put it bluntly, blue is a horrid socket (the only useful ‘blue’ stat is stamina). If you are using epic gems you may wish to ignore blue sockets and gem them with red attack power gems instead. If you need to use a blue gem (perhaps for your meta gem), the previously mentioned green gems and the following purple gems aren’t too bad;
Steady Eye of Zul or Steady Forest Emerald
Vivid Eye of Zul or Vivid Forest Emerald
Balanced Dreadstone or Balanced Night’s Eye
Summary (Tl;dr)
Red = Attack Power
Yellow = Hit/Resilience (whichever isn’t high enough)
Blue = Meh
The Small Print
I lied – the best gem, of any colour, is this one. Unfortunately it’s only available to Jewel Crafters;
(I wouldn’t leave Dalaran without them).

hey just wondering i hit 80 savin honor should i get the brutal stuff now or wait till next patch?
Wait until Season7 starts (in a few days, Tue/Wed), instead of Hateful gear you’ll be able to buy Deadly, without needing arena points.
Score thnx love the site btw great info
Thanks a lot for this awesome guide!!!
Hmm pre 3.2.2 I c a lot of armor PEN gems on high end PVE’rs rogues seem to be the highest DPS PVE atm to!
What is this “PVE” that you talk of?
Yeah until it gets nerfed hard, +ArP does pretty nice damage for those 1-1-1-1-1-2-1-1-1-1-1-3-1-1-1-4-1-1-1-1-1-2-etc PVE rogues out there
Thanks a lot. I was looking for ap vs agilty info. Plus general gemming options and even if i should be gemming hit. You answered these all. Thank you